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A BHQ®-1 Glyc. Supers Column is packed with BHQ-1 Glycolate CPG 1000 Å and is for use on DNA synthesizers with luer column fittings (ABI 394, Expedite, Biosearch 8700, etc.). BHQ-1 CPG is used to add the non-fluorescent quencher BHQ-1 to the 3' end of an oligonucleotide. BHQ-1 quencher has maximal absorption in the 480 to 580 nm range, which provides excellent quenching of fluorophores emitting in this range, eg Fluorescein, TET, JOE, HEX, etc. BHQ-1 Glycolate CPG has a glycolate linkage to the CPG support. The glycolate linker allows for rapid cleavage of the oligonucleotides and is labile enough for base sensitive oligonucleotides. The 1000 Å CPG is best suited for the synthesis of DNA sequences up to 100-mers in length.

Properties:

  • Appearance:

    dark red powder

  • Absorption Maximum (Lambda Max):

    534

  • Extinction Coefficient at Lambda max:

    34000

  • Extinction Coefficient at 260 nm:

    8000

Spectral properties measured in PCR buffer as 3'-labeled poly(T) oligo.

Product usage:

  • Cleavage conditions:

    When using fast deprotecting amidites use concentrated Ammonia for 45 min at 25 °C or Ammonia/ Methylamine (AMA) (1:1) for 15 min at 25 °C; or t-butylamine/H2O (1:3) for 90 min at 25 °C (TAMRA requires deprotection with TBA). When using standard amidites (eg. C-Bz, G-iBu) use concentrated Ammonia for 45 min at 25 °C.

  • Deprotection conditions:

    When using fast deprotecting amidites (eg. C-Ac, G-DMF) deprotect in concentrated ammonia for 1 hour or AMA for 30 minutes at 60 °C. When using standard amidites (eg. C-Bz, G-iBu) deprotect in concentrated ammonia for 5 hours at 60 °C. If you are using base sensitive fluorophores (ie. TAMRA) we recommend deprotecting the oligonucleotide in t-butylamine/H2O (1:3) for 12-15 hours at 60 °C.

  • Image of cleaved and deprotected structure:
    109228c.gif

  • The mass this product adds after conjugation and work-up (the additional mass seen by mass spectrometry) is:

    554.49

Storage and handling:

  • Shipping conditions:

    Ambient

  • Storage conditions:

    -15 to -30 °C in sealed container